1 Response_reg#1
6-115 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:6:2.56e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0100555
Response regulator OmpR family
Blautia wexlerae DSM 19850 · GCF_000484655
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000484655#K316_RS0100555Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:3.26e-24:229:77:77- Raw architecture: Response_reg:6:2.56e-38:115:111:111#Trans_reg_C:153:3.26e-24:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000484655::NZ_AXVN01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117242-119504Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000001.1::G00002Context members
K316_RS0100555K316_RS0100560
Partner locus tags
K316_RS0100555K316_RS0100560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025576945.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YUP3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YUP3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0100555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000001.1Sequence record reported by the local genomic context database.
Genomic interval117 242-117 946 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 242-119 504 ntGCF_000484655::NZ_AXVN01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span117 242-119 504 nt2 263 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 242 nt119 504 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K316_RS0100555GCF_000484655#K316_RS0100555
RROmpRCurrent focus
117 242-117 946 nt · Reverse (-)
K316_RS0100560GCF_000484655#K316_RS0100560
HKClassic
117 939-119 504 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0100555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049174
Simplified PFAM architecture for RROC_1049174
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1049174
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0100555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key