1 Response_reg#1
6-111 aa · 106 aa · 37.3% of protein
Raw token
Response_reg:6:4.14e-26:111:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS15620
Response regulator, unclassified
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassRRTypeunclassifiedLength284 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000469345#HMPREF0373_RS15620Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length284 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 284 aa (65.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa284 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
187-228 aa · 42 aa · 14.8% of protein
Raw token
HTH_AraC:187:0.00000000197:228:42:423 HTH_AraC#3
240-278 aa · 39 aa · 13.7% of protein
Raw token
HTH_AraC:240:0.00000087:278:39:42- Raw architecture: Response_reg:6:4.14e-26:111:106:111#HTH_AraC:187:0.00000000197:228:42:42#HTH_AraC:240:0.00000087:278:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000469345::NZ_KI271193.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29024-29878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_02254RefSeq proteinWP_022035847.1
Context group ID
GCF_000469345::NZ_KI271193.1::G00050Context members
HMPREF0373_RS15620
Partner locus tags
HMPREF0373_RS15620
Partner old locus tags
HMPREF0373_02254
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022035847.1Primary protein accession used for annex mappings.
UniProt accessionA0A173UUZ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A173UUZ0_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS15620Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_02254Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271193.1Sequence record reported by the local genomic context database.
Genomic interval29 024-29 878 nt855 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 024-29 878 ntGCF_000469345::NZ_KI271193.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271193.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271193.1All displayed genes belong to this local TCS context.
Neighborhood span29 024-29 878 nt855 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 024 nt29 878 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0373_RS15620GCF_000469345#HMPREF0373_RS15620
RRunclassifiedCurrent focus
29 024-29 878 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS15620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0592205
Simplified PFAM architecture for RROC_0592205
PFAM domain coverage: 187 / 284 aa (65.8%)
1 aa284 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[201-278]
- Domain count: 2
- Matched identifier: RROC_0592205
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 201-278 ; HTH_18 201-278
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS15620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key