1 SBP_bac_3#1
44-260 aa · 217 aa · 22.7% of protein
Raw token
SBP_bac_3:44:1.43e-33:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS01125
Histidine kinase, Hybrid
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeHybridLength954 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS01125Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length954 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage728 / 954 aa (76.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa954 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 21.5% of protein
Raw token
SBP_bac_3:282:0.00000000000601:486:220:2243 HisKA#3
571-639 aa · 69 aa · 7.2% of protein
Raw token
HisKA:571:7.47e-19:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 12.5% of protein
Raw token
HATPase_c:685:1.96e-29:803:119:1095 Response_reg#5
829-946 aa · 118 aa · 12.4% of protein
Raw token
Response_reg:829:1.07e-30:946:118:111- Raw architecture: SBP_bac_3:44:1.43e-33:260:227:224#SBP_bac_3:282:0.00000000000601:486:220:224#HisKA:571:7.47e-19:639:69:64#HATPase_c:685:1.96e-29:803:119:109#Response_reg:829:1.07e-30:946:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271080.1::G00003
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span1738-6807Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_00502RefSeq proteinWP_021737701.1
Context group ID
GCF_000469345::NZ_KI271080.1::G00003Context members
HMPREF0373_RS01125HMPREF0373_RS01130
Partner locus tags
HMPREF0373_RS01125HMPREF0373_RS01130
Partner old locus tags
HMPREF0373_00502HMPREF0373_00503
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021737701.1Primary protein accession used for annex mappings.
UniProt accessionU2Q467Primary UniProt accession resolved in the annex database.
UniProt IDU2Q467_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS01125Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_00502Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271080.1Sequence record reported by the local genomic context database.
Genomic interval1 738-4 602 nt2 865 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 738-6 807 ntGCF_000469345::NZ_KI271080.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271080.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271080.1All displayed genes belong to this local TCS context.
Neighborhood span1 738-6 807 nt5 070 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 738 nt6 807 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS01125GCF_000469345#HMPREF0373_RS01125
HKHybridCurrent focus
1 738-4 602 nt · Reverse (-)
HMPREF0373_RS01130GCF_000469345#HMPREF0373_RS01130
HKHybrid
4 645-6 807 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS01125The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0322851
Simplified PFAM architecture for HKOC_0322851
PFAM domain coverage: 519 / 954 aa (54.4%)
1 aa954 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[45-261] | HisKA[571-639] | HATPase_c[686-801] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0322851
- Positioned domains: SBP_bac_3 45-261 ; HisKA 571-639 ; HATPase_c 686-801 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS01125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key