1 Response_reg#1
5-117 aa · 113 aa · 21.5% of protein
Raw token
Response_reg:5:7.14e-25:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS07060
Response regulator, unclassified
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassRRTypeunclassifiedLength526 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000469345#HMPREF0373_RS07060Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length526 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 526 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa526 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
433-474 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:433:0.0000000146:474:42:423 HTH_AraC#3
488-524 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:488:0.00000613:524:37:42- Raw architecture: Response_reg:5:7.14e-25:117:113:111#HTH_AraC:433:0.0000000146:474:42:42#HTH_AraC:488:0.00000613:524:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000469345::NZ_KI271120.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1940-3520Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_00797RefSeq proteinWP_021738985.1
Context group ID
GCF_000469345::NZ_KI271120.1::G00023Context members
HMPREF0373_RS07060
Partner locus tags
HMPREF0373_RS07060
Partner old locus tags
HMPREF0373_00797
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021738985.1Primary protein accession used for annex mappings.
UniProt accessionA0A173R6V8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173R6V8_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS07060Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_00797Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271120.1Sequence record reported by the local genomic context database.
Genomic interval1 940-3 520 nt1 581 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 940-3 520 ntGCF_000469345::NZ_KI271120.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271120.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271120.1All displayed genes belong to this local TCS context.
Neighborhood span1 940-3 520 nt1 581 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 940 nt3 520 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0373_RS07060GCF_000469345#HMPREF0373_RS07060
RRunclassifiedCurrent focus
1 940-3 520 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS07060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0117510
Simplified PFAM architecture for RROC_0117510
PFAM domain coverage: 190 / 526 aa (36.1%)
1 aa526 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[447-524]
- Domain count: 2
- Matched identifier: RROC_0117510
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 447-524 ; HTH_18 447-524
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS07060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key