1 Response_reg#1
4-76 aa · 73 aa · 34.8% of protein
Raw token
Response_reg:4:0.0000153:76:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS05145
Response regulator, unclassified
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassRRTypeunclassifiedLength210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000469345#HMPREF0373_RS05145Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage73 / 210 aa (34.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000153:76:79:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000469345::NZ_KI271108.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span97964-98596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_03200RefSeq proteinWP_022036188.1
Context group ID
GCF_000469345::NZ_KI271108.1::G00016Context members
HMPREF0373_RS05145
Partner locus tags
HMPREF0373_RS05145
Partner old locus tags
HMPREF0373_03200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022036188.1Primary protein accession used for annex mappings.
UniProt accessionA0A173RTU4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173RTU4_EUBRADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS05145Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_03200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271108.1Sequence record reported by the local genomic context database.
Genomic interval97 964-98 596 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 964-98 596 ntGCF_000469345::NZ_KI271108.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271108.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271108.1All displayed genes belong to this local TCS context.
Neighborhood span97 964-98 596 nt633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 964 nt98 596 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0373_RS05145GCF_000469345#HMPREF0373_RS05145
RRunclassifiedCurrent focus
97 964-98 596 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS05145The current gene is the representative for this cluster.
PFAM architectureLactamase_B1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2020127
Simplified PFAM architecture for RROC_2020127
PFAM domain coverage: 182 / 210 aa (86.7%)
1 aa210 aa
Lactamase_B
- Simplified architecture: Lactamase_B
- Raw architecture: Lactamase_B[12-193]
- Domain count: 1
- Matched identifier: RROC_2020127
- Positioned domains: Lactamase_B 12-193 ; Lactamase_B 12-193
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS05145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key