1 Response_reg#1
26-96 aa · 71 aa · 32.9% of protein
Raw token
Response_reg:26:2.28e-16:96:73:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS03855
Response regulator LytTR family
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassRRTypeLytTRLength216 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000469345#HMPREF0373_RS03855Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 216 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 LytTR#2
118-209 aa · 92 aa · 42.6% of protein
Raw token
LytTR:118:0.000000000000281:209:97:98- Raw architecture: Response_reg:26:2.28e-16:96:73:111#LytTR:118:0.000000000000281:209:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000469345::NZ_KI271096.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span149439-150089Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_02997RefSeq proteinWP_021738296.1
Context group ID
GCF_000469345::NZ_KI271096.1::G00012Context members
HMPREF0373_RS03855
Partner locus tags
HMPREF0373_RS03855
Partner old locus tags
HMPREF0373_02997
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021738296.1Primary protein accession used for annex mappings.
UniProt accessionU2NW79Primary UniProt accession resolved in the annex database.
UniProt IDU2NW79_EUBRADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS03855Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_02997Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271096.1Sequence record reported by the local genomic context database.
Genomic interval149 439-150 089 nt651 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span149 439-150 089 ntGCF_000469345::NZ_KI271096.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271096.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271096.1All displayed genes belong to this local TCS context.
Neighborhood span149 439-150 089 nt651 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 439 nt150 089 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0373_RS03855GCF_000469345#HMPREF0373_RS03855
RRLytTRCurrent focus
149 439-150 089 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS03855The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1880307
Simplified PFAM architecture for RROC_1880307
PFAM domain coverage: 178 / 216 aa (82.4%)
1 aa216 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[8-96] | LytTR[120-208]
- Domain count: 2
- Matched identifier: RROC_1880307
- Positioned domains: Response_reg 8-96 ; Response_reg 8-96 ; LytTR 120-208 ; LytTR 120-208
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS03855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key