1 Response_reg#1
11-119 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:11:6.98e-35:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS06980
Response regulator OmpR family
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466465#HMPREF1548_RS06980Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 230 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-226 aa · 74 aa · 32.2% of protein
Raw token
Trans_reg_C:153:4.29e-24:226:75:77- Raw architecture: Response_reg:11:6.98e-35:119:111:111#Trans_reg_C:153:4.29e-24:226:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466465::NZ_KE992678.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6922-8687Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_02682RefSeq proteinWP_021635199.1
Context group ID
GCF_000466465::NZ_KE992678.1::G00062Context members
HMPREF1548_RS06975HMPREF1548_RS06980
Partner locus tags
HMPREF1548_RS06975HMPREF1548_RS06980
Partner old locus tags
HMPREF1548_02681HMPREF1548_02682
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021635199.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS06980Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_02682Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992678.1Sequence record reported by the local genomic context database.
Genomic interval7 995-8 687 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 922-8 687 ntGCF_000466465::NZ_KE992678.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992678.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992678.1All displayed genes belong to this local TCS context.
Neighborhood span6 922-8 687 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 922 nt8 687 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1548_RS06975GCF_000466465#HMPREF1548_RS06975
HKClassic
6 922-8 007 nt · Reverse (-)
HMPREF1548_RS06980GCF_000466465#HMPREF1548_RS06980
RROmpRCurrent focus
7 995-8 687 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS06980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202480
Simplified PFAM architecture for RROC_1202480
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-118] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1202480
- Positioned domains: Response_reg 11-118 ; Response_reg 11-118 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS06980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key