1 Response_reg#1
7-117 aa · 111 aa · 46.1% of protein
Raw token
Response_reg:7:0.00000000000006:117:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS06590
Response regulator LytTR family
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466465#HMPREF1548_RS06590Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 241 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.2% of protein
Raw token
LytTR:139:3.77e-19:230:97:98- Raw architecture: Response_reg:7:0.00000000000006:117:119:111#LytTR:139:3.77e-19:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466465::NZ_KE992672.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2596-3321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_00689RefSeq proteinWP_021635107.1
Context group ID
GCF_000466465::NZ_KE992672.1::G00058Context members
HMPREF1548_RS06590
Partner locus tags
HMPREF1548_RS06590
Partner old locus tags
HMPREF1548_00689
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021635107.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3ID43Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3ID43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS06590Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_00689Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992672.1Sequence record reported by the local genomic context database.
Genomic interval2 596-3 321 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 596-3 321 ntGCF_000466465::NZ_KE992672.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992672.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992672.1All displayed genes belong to this local TCS context.
Neighborhood span2 596-3 321 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 596 nt3 321 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1548_RS06590GCF_000466465#HMPREF1548_RS06590
RRLytTRCurrent focus
2 596-3 321 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS06590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0863790
Simplified PFAM architecture for RROC_0863790
PFAM domain coverage: 199 / 241 aa (82.6%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-118] | LytTR[142-228]
- Domain count: 2
- Matched identifier: RROC_0863790
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; LytTR 142-228 ; LytTR 142-228
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS06590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key