1 Response_reg#1
6-121 aa · 116 aa · 49.6% of protein
Raw token
Response_reg:6:0.000000000752:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS05685
Response regulator LytTR family
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466465#HMPREF1548_RS05685Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 234 aa (85.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
148-231 aa · 84 aa · 35.9% of protein
Raw token
LytTR:148:1.11e-16:231:90:98- Raw architecture: Response_reg:6:0.000000000752:121:118:111#LytTR:148:1.11e-16:231:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466465::NZ_KE992671.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15494-16198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_02375RefSeq proteinWP_021634887.1
Context group ID
GCF_000466465::NZ_KE992671.1::G00049Context members
HMPREF1548_RS05685
Partner locus tags
HMPREF1548_RS05685
Partner old locus tags
HMPREF1548_02375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021634887.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3HYG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3HYG8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS05685Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_02375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992671.1Sequence record reported by the local genomic context database.
Genomic interval15 494-16 198 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 494-16 198 ntGCF_000466465::NZ_KE992671.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992671.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992671.1All displayed genes belong to this local TCS context.
Neighborhood span15 494-16 198 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 494 nt16 198 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1548_RS05685GCF_000466465#HMPREF1548_RS05685
RRLytTRCurrent focus
15 494-16 198 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS05685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049093
Simplified PFAM architecture for RROC_1049093
PFAM domain coverage: 201 / 234 aa (85.9%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-120] | LytTR[147-231]
- Domain count: 2
- Matched identifier: RROC_1049093
- Positioned domains: Response_reg 5-120 ; Response_reg 5-120 ; LytTR 147-231 ; LytTR 147-231
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS05685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key