1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:5.33e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS05075
Response regulator OmpR family
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466465#HMPREF1548_RS05075Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:150:6.82e-32:224:75:77- Raw architecture: Response_reg:4:5.33e-28:113:111:111#Trans_reg_C:150:6.82e-32:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466465::NZ_KE992668.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46709-48444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_00567RefSeq proteinWP_021634743.1
Context group ID
GCF_000466465::NZ_KE992668.1::G00042Context members
HMPREF1548_RS05070HMPREF1548_RS05075
Partner locus tags
HMPREF1548_RS05070HMPREF1548_RS05075
Partner old locus tags
HMPREF1548_00566HMPREF1548_00567
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021634743.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS05075Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_00567Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992668.1Sequence record reported by the local genomic context database.
Genomic interval47 758-48 444 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 709-48 444 ntGCF_000466465::NZ_KE992668.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992668.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992668.1All displayed genes belong to this local TCS context.
Neighborhood span46 709-48 444 nt1 736 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 709 nt48 444 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1548_RS05070GCF_000466465#HMPREF1548_RS05070
HKClassic
46 709-47 749 nt · Reverse (-)
HMPREF1548_RS05075GCF_000466465#HMPREF1548_RS05075
RROmpRCurrent focus
47 758-48 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS05075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304845
Simplified PFAM architecture for RROC_1304845
PFAM domain coverage: 182 / 228 aa (79.8%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1304845
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS05075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key