1 Response_reg#1
5-105 aa · 101 aa · 19.3% of protein
Raw token
Response_reg:5:3.82e-24:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS04410
Response regulator, unclassified
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeunclassifiedLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466465#HMPREF1548_RS04410Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage174 / 523 aa (33.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
427-468 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:427:0.00000189:468:42:423 HTH_AraC#3
488-518 aa · 31 aa · 5.9% of protein
Raw token
HTH_AraC:488:0.000000252:518:31:42- Raw architecture: Response_reg:5:3.82e-24:105:101:111#HTH_AraC:427:0.00000189:468:42:42#HTH_AraC:488:0.000000252:518:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466465::NZ_KE992666.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46658-50028Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_02236RefSeq proteinWP_021634581.1
Context group ID
GCF_000466465::NZ_KE992666.1::G00039Context members
HMPREF1548_RS04410HMPREF1548_RS04415
Partner locus tags
HMPREF1548_RS04410HMPREF1548_RS04415
Partner old locus tags
HMPREF1548_02236HMPREF1548_02237
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021634581.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS04410Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_02236Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992666.1Sequence record reported by the local genomic context database.
Genomic interval46 658-48 229 nt1 572 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 658-50 028 ntGCF_000466465::NZ_KE992666.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992666.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992666.1All displayed genes belong to this local TCS context.
Neighborhood span46 658-50 028 nt3 371 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 658 nt50 028 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1548_RS04410GCF_000466465#HMPREF1548_RS04410
RRunclassifiedCurrent focus
46 658-48 229 nt · Forward (+)
HMPREF1548_RS04415GCF_000466465#HMPREF1548_RS04415
HKClassic
48 238-50 028 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS04410The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0121632
Simplified PFAM architecture for RROC_0121632
PFAM domain coverage: 182 / 523 aa (34.8%)
1 aa523 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-107] | HTH_18[440-518]
- Domain count: 2
- Matched identifier: RROC_0121632
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; HTH_18 440-518 ; HTH_18 440-518
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS04410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key