1 Response_reg#1
4-116 aa · 113 aa · 22.2% of protein
Raw token
Response_reg:4:5.39e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS02970
Response regulator, unclassified
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeunclassifiedLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466465#HMPREF1548_RS02970Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 510 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-453 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:412:0.0000000000439:453:42:423 HTH_AraC#3
473-502 aa · 30 aa · 5.9% of protein
Raw token
HTH_AraC:473:0.0000000209:502:30:42- Raw architecture: Response_reg:4:5.39e-25:116:113:111#HTH_AraC:412:0.0000000000439:453:42:42#HTH_AraC:473:0.0000000209:502:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466465::NZ_KE992657.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36550-39859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_00248RefSeq proteinWP_021634241.1
Context group ID
GCF_000466465::NZ_KE992657.1::G00027Context members
HMPREF1548_RS02965HMPREF1548_RS02970
Partner locus tags
HMPREF1548_RS02965HMPREF1548_RS02970
Partner old locus tags
HMPREF1548_00247HMPREF1548_00248
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021634241.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS02970Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_00248Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992657.1Sequence record reported by the local genomic context database.
Genomic interval38 327-39 859 nt1 533 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 550-39 859 ntGCF_000466465::NZ_KE992657.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992657.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992657.1All displayed genes belong to this local TCS context.
Neighborhood span36 550-39 859 nt3 310 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 550 nt39 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1548_RS02965GCF_000466465#HMPREF1548_RS02965
HKClassic
36 550-38 346 nt · Forward (+)
HMPREF1548_RS02970GCF_000466465#HMPREF1548_RS02970
RRunclassifiedCurrent focus
38 327-39 859 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS02970The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0146258
Simplified PFAM architecture for RROC_0146258
PFAM domain coverage: 192 / 510 aa (37.6%)
1 aa510 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[425-504]
- Domain count: 2
- Matched identifier: RROC_0146258
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 425-504 ; HTH_18 425-504
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS02970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key