1 Response_reg#1
4-117 aa · 114 aa · 47.5% of protein
Raw token
Response_reg:4:0.000000000163:117:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS02020
Response regulator LytTR family
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466465#HMPREF1548_RS02020Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 240 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-231 aa · 87 aa · 36.3% of protein
Raw token
LytTR:145:0.000000000464:231:92:98- Raw architecture: Response_reg:4:0.000000000163:117:118:111#LytTR:145:0.000000000464:231:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466465::NZ_KE992653.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23134-23856Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_00191RefSeq proteinWP_021634013.1
Context group ID
GCF_000466465::NZ_KE992653.1::G00016Context members
HMPREF1548_RS02020
Partner locus tags
HMPREF1548_RS02020
Partner old locus tags
HMPREF1548_00191
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021634013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS02020Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_00191Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992653.1Sequence record reported by the local genomic context database.
Genomic interval23 134-23 856 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 134-23 856 ntGCF_000466465::NZ_KE992653.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992653.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992653.1All displayed genes belong to this local TCS context.
Neighborhood span23 134-23 856 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 134 nt23 856 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1548_RS02020GCF_000466465#HMPREF1548_RS02020
RRLytTRCurrent focus
23 134-23 856 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS02020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0883427
Simplified PFAM architecture for RROC_0883427
PFAM domain coverage: 185 / 240 aa (77.1%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[13-111] | LytTR[146-231]
- Domain count: 2
- Matched identifier: RROC_0883427
- Positioned domains: Response_reg 13-111 ; Response_reg 13-111 ; LytTR 146-231 ; LytTR 146-231
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS02020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key