1 HisKA#1
92-154 aa · 63 aa · 20.1% of protein
Raw token
HisKA:92:0.000000287:154:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS01615
Histidine kinase, Classic
Clostridium sp. KLE 1755 · GCF_000466465
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466465#HMPREF1548_RS01615Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 313 aa (53.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
201-305 aa · 105 aa · 33.5% of protein
Raw token
HATPase_c:201:3.25e-26:305:105:109- Raw architecture: HisKA:92:0.000000287:154:63:64#HATPase_c:201:3.25e-26:305:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466465::NZ_KE992650.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span42953-43894Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_01941RefSeq proteinWP_021633915.1
Context group ID
GCF_000466465::NZ_KE992650.1::G00011Context members
HMPREF1548_RS01615
Partner locus tags
HMPREF1548_RS01615
Partner old locus tags
HMPREF1548_01941
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021633915.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS01615Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_01941Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992650.1Sequence record reported by the local genomic context database.
Genomic interval42 953-43 894 nt942 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 953-43 894 ntGCF_000466465::NZ_KE992650.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992650.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992650.1All displayed genes belong to this local TCS context.
Neighborhood span42 953-43 894 nt942 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 953 nt43 894 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1548_RS01615GCF_000466465#HMPREF1548_RS01615
HKClassicCurrent focus
42 953-43 894 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS01615The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875100
Simplified PFAM architecture for HKOC_2875100
PFAM domain coverage: 168 / 313 aa (53.7%)
1 aa313 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[91-153] | HATPase_c[201-305]
- Domain count: 2
- Matched identifier: HKOC_2875100
- Positioned domains: HisKA 91-153 ; HATPase_c 201-305
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS01615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key