1 Response_reg#1
7-87 aa · 81 aa · 32.9% of protein
Raw token
Response_reg:7:0.000000166:87:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS01475
Response regulator LytTR family
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466465#HMPREF1548_RS01475Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 246 aa (70.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 37.4% of protein
Raw token
LytTR:139:0.00000000096:230:97:98- Raw architecture: Response_reg:7:0.000000166:87:83:111#LytTR:139:0.00000000096:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466465::NZ_KE992650.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12896-13636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_01909RefSeq proteinWP_198168600.1
Context group ID
GCF_000466465::NZ_KE992650.1::G00009Context members
HMPREF1548_RS01475
Partner locus tags
HMPREF1548_RS01475
Partner old locus tags
HMPREF1548_01909
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_198168600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS01475Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_01909Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992650.1Sequence record reported by the local genomic context database.
Genomic interval12 896-13 636 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 896-13 636 ntGCF_000466465::NZ_KE992650.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992650.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992650.1All displayed genes belong to this local TCS context.
Neighborhood span12 896-13 636 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 896 nt13 636 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1548_RS01475GCF_000466465#HMPREF1548_RS01475
RRLytTRCurrent focus
12 896-13 636 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS01475The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0770395
Simplified PFAM architecture for RROC_0770395
PFAM domain coverage: 91 / 246 aa (37.0%)
1 aa246 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[140-230]
- Domain count: 1
- Matched identifier: RROC_0770395
- Positioned domains: LytTR 140-230 ; LytTR 140-230
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS01475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key