1 Response_reg#1
4-112 aa · 109 aa · 60.9% of protein
Raw token
Response_reg:4:5.63e-25:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIM_RS02460
Response regulator, unclassified
Clostridioides difficile DA00128 · GCF_000450005
ClassRRTypeunclassifiedLength179 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450005#QIM_RS02460Stable P2CS identifier used across views.
GenomeGCF_000450005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length179 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 179 aa (60.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:5.63e-25:112:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450005::NZ_AVIX01000019.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86856-88698Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIM_0490RefSeq proteinWP_021394317.1
Context group ID
GCF_000450005::NZ_AVIX01000019.1::G00004Context members
QIM_RS02455QIM_RS02460
Partner locus tags
QIM_RS02455QIM_RS02460
Partner old locus tags
QIM_0489QIM_0490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021394317.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIM_RS02460Primary locus identifier stored in the genes table.
Old locus tagQIM_0490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIX01000019.1Sequence record reported by the local genomic context database.
Genomic interval88 159-88 698 nt540 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 856-88 698 ntGCF_000450005::NZ_AVIX01000019.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450005::NZ_AVIX01000019.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIX01000019.1All displayed genes belong to this local TCS context.
Neighborhood span86 856-88 698 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 856 nt88 698 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QIM_RS02455GCF_000450005#QIM_RS02455
HKClassic
86 856-88 037 nt · Reverse (-)
QIM_RS02460GCF_000450005#QIM_RS02460
RRunclassifiedCurrent focus
88 159-88 698 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450005#QIM_RS02460The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2187480
Simplified PFAM architecture for RROC_2187480
PFAM domain coverage: 108 / 179 aa (60.3%)
1 aa179 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-111]
- Domain count: 1
- Matched identifier: RROC_2187480
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111
Cluster members and taxonomy
Representative gene: GCF_000450005#QIM_RS02460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 322 · GCF_000450005
AssemblyASM45000v2 · Contighaploid
Genome composition4 217 009 bp · 28,5% GCClostridioides difficile DA00128
Signal transduction countsGenes 99 · HK 46 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key