1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:2.16e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIM_RS01080
Response regulator OmpR family
Clostridioides difficile DA00128 · GCF_000450005
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450005#QIM_RS01080Stable P2CS identifier used across views.
GenomeGCF_000450005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:149:9.9e-29:224:76:77- Raw architecture: Response_reg:4:2.16e-34:113:111:111#Trans_reg_C:149:9.9e-29:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450005::NZ_AVIX01000013.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6194-8132Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIM_0212RefSeq proteinWP_009895237.1
Context group ID
GCF_000450005::NZ_AVIX01000013.1::G00001Context members
QIM_RS01080QIM_RS01085
Partner locus tags
QIM_RS01080QIM_RS01085
Partner old locus tags
QIM_0212QIM_0213
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009895237.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIM_RS01080Primary locus identifier stored in the genes table.
Old locus tagQIM_0212Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIX01000013.1Sequence record reported by the local genomic context database.
Genomic interval6 194-6 880 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 194-8 132 ntGCF_000450005::NZ_AVIX01000013.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450005::NZ_AVIX01000013.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIX01000013.1All displayed genes belong to this local TCS context.
Neighborhood span6 194-8 132 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 194 nt8 132 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QIM_RS01080GCF_000450005#QIM_RS01080
RROmpRCurrent focus
6 194-6 880 nt · Forward (+)
QIM_RS01085GCF_000450005#QIM_RS01085
HKClassic
6 891-8 132 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0203225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302095
Simplified PFAM architecture for RROC_1302095
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1302095
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-223 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0203225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 322 · GCF_000450005
AssemblyASM45000v2 · Contighaploid
Genome composition4 217 009 bp · 28,5% GCClostridioides difficile DA00128
Signal transduction countsGenes 99 · HK 46 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key