1 HisKA#1
118-178 aa · 61 aa · 18.3% of protein
Raw token
HisKA:118:0.00000713:178:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QC5_RS07515
Histidine kinase, Classic
Clostridioides difficile CD34 · GCF_000448765
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448765#QC5_RS07515Stable P2CS identifier used across views.
GenomeGCF_000448765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 334 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
224-331 aa · 108 aa · 32.3% of protein
Raw token
HATPase_c:224:2.76e-25:331:108:109- Raw architecture: HisKA:118:0.00000713:178:63:64#HATPase_c:224:2.76e-25:331:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448765::NZ_AVGQ01000030.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6487-8189Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQC5_1509RefSeq proteinWP_021366592.1
Context group ID
GCF_000448765::NZ_AVGQ01000030.1::G00022Context members
QC5_RS07515QC5_RS07520
Partner locus tags
QC5_RS07515QC5_RS07520
Partner old locus tags
QC5_1509QC5_1510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021366592.1Primary protein accession used for annex mappings.
UniProt accessionA0A069ATB7Primary UniProt accession resolved in the annex database.
UniProt IDA0A069ATB7_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQC5_RS07515Primary locus identifier stored in the genes table.
Old locus tagQC5_1509Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGQ01000030.1Sequence record reported by the local genomic context database.
Genomic interval6 487-7 491 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 487-8 189 ntGCF_000448765::NZ_AVGQ01000030.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448765::NZ_AVGQ01000030.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGQ01000030.1All displayed genes belong to this local TCS context.
Neighborhood span6 487-8 189 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 487 nt8 189 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QC5_RS07515GCF_000448765#QC5_RS07515
HKClassicCurrent focus
6 487-7 491 nt · Reverse (-)
QC5_RS07520GCF_000448765#QC5_RS07520
RROmpR
7 515-8 189 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS07515The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849842
Simplified PFAM architecture for HKOC_2849842
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849842
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS07515
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 127 total members. Page 1 / 3.
GCF_000448765#QC5_RS07515 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 260 · GCF_000448765
AssemblyASM44876v2 · Contighaploid
Genome composition4 017 712 bp · 28,0% GCClostridioides difficile CD34
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key