1 HisKA#1
118-178 aa · 61 aa · 18.3% of protein
Raw token
HisKA:118:0.00000713:178:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWU80_RS11790
Histidine kinase, Classic
Clostridioides difficile · GCF_001263655
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001263655#AWU80_RS11790Stable P2CS identifier used across views.
GenomeGCF_001263655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 334 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
224-331 aa · 108 aa · 32.3% of protein
Raw token
HATPase_c:224:2.76e-25:331:108:109- Raw architecture: HisKA:118:0.00000713:178:63:64#HATPase_c:224:2.76e-25:331:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001263655::NZ_BBYC01000141.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span230998-232700Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001263655::NZ_BBYC01000141.1::G00031Context members
AWU80_RS11785AWU80_RS11790
Partner locus tags
AWU80_RS11785AWU80_RS11790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021366592.1Primary protein accession used for annex mappings.
UniProt accessionA0A069ATB7Primary UniProt accession resolved in the annex database.
UniProt IDA0A069ATB7_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWU80_RS11790Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BBYC01000141.1Sequence record reported by the local genomic context database.
Genomic interval231 696-232 700 nt1 005 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span230 998-232 700 ntGCF_001263655::NZ_BBYC01000141.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263655::NZ_BBYC01000141.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BBYC01000141.1All displayed genes belong to this local TCS context.
Neighborhood span230 998-232 700 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
230 998 nt232 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWU80_RS11785GCF_001263655#AWU80_RS11785
RROmpR
230 998-231 672 nt · Forward (+)
AWU80_RS11790GCF_001263655#AWU80_RS11790
HKClassicCurrent focus
231 696-232 700 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS07515Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849842
Simplified PFAM architecture for HKOC_2849842
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849842
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS07515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001263655
AssemblyASM126365v1 · Contighaploid
Genome composition4 035 637 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key