1 Response_reg#1
4-115 aa · 112 aa · 94.1% of protein
Raw token
Response_reg:4:8.72e-34:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0103615
Response regulator, CheY family
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeCheYLength119 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424205#G605_RS0103615Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length119 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 119 aa (94.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa119 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:8.72e-34:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424205::NZ_AUJL01000005.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span95059-95418Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000005.1::G00012Context members
G605_RS0103615
Partner locus tags
G605_RS0103615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027637936.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2JLZ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2JLZ8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0103615Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000005.1Sequence record reported by the local genomic context database.
Genomic interval95 059-95 418 nt360 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 059-95 418 ntGCF_000424205::NZ_AUJL01000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000005.1All displayed genes belong to this local TCS context.
Neighborhood span95 059-95 418 nt360 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 059 nt95 418 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G605_RS0103615GCF_000424205#G605_RS0103615
RRCheYCurrent focus
95 059-95 418 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0103615The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2448824
Simplified PFAM architecture for RROC_2448824
PFAM domain coverage: 112 / 119 aa (94.1%)
1 aa119 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_2448824
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0103615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key