1 Response_reg#1
4-112 aa · 109 aa · 32.6% of protein
Raw token
Response_reg:4:0.0000000000000106:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0100835
Response regulator, unclassified
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0100835Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 334 aa (56.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
238-279 aa · 42 aa · 12.6% of protein
Raw token
HTH_AraC:238:0.00000000513:279:42:423 HTH_AraC#3
291-327 aa · 37 aa · 11.1% of protein
Raw token
HTH_AraC:291:0.000000203:327:37:42- Raw architecture: Response_reg:4:0.0000000000000106:112:109:111#HTH_AraC:238:0.00000000513:279:42:42#HTH_AraC:291:0.000000203:327:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184098-186430Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000001.1::G00003Context members
G605_RS0100835G605_RS0100840
Partner locus tags
G605_RS0100835G605_RS0100840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027637435.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0100835Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000001.1Sequence record reported by the local genomic context database.
Genomic interval184 098-185 102 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 098-186 430 ntGCF_000424205::NZ_AUJL01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span184 098-186 430 nt2 333 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 098 nt186 430 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0100835GCF_000424205#G605_RS0100835
RRunclassifiedCurrent focus
184 098-185 102 nt · Reverse (-)
G605_RS0100840GCF_000424205#G605_RS0100840
HKClassic
185 105-186 430 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0100835The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0512675
Simplified PFAM architecture for RROC_0512675
PFAM domain coverage: 187 / 334 aa (56.0%)
1 aa334 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-114] | HTH_AraC[238-279] | HTH_AraC[294-327]
- Domain count: 3
- Matched identifier: RROC_0512675
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_AraC 238-279 ; HTH_AraC 238-279 ; HTH_AraC 294-327 ; HTH_AraC 294-327
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0100835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key