1 Response_reg#1
6-120 aa · 115 aa · 43.6% of protein
Raw token
Response_reg:6:7.79e-29:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II1_RS00005
Response regulator Spo0A family
Bacillus cereus MC118 · GCF_000399245
ClassRRTypeSpo0ALength264 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399245#II1_RS00005Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 264 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Spo0A_C#2
154-257 aa · 104 aa · 39.4% of protein
Raw token
Spo0A_C:154:3.67e-65:257:104:104- Raw architecture: Response_reg:6:7.79e-29:120:115:111#Spo0A_C:154:3.67e-65:257:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399245::NZ_KB976338.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-793Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII1_00001RefSeq proteinWP_016100158.1
Context group ID
GCF_000399245::NZ_KB976338.1::G00001Context members
II1_RS00005
Partner locus tags
II1_RS00005
Partner old locus tags
II1_00001
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016100158.1Primary protein accession used for annex mappings.
UniProt accessionA0A1G4EVS3Primary UniProt accession resolved in the annex database.
UniProt IDA0A1G4EVS3_BACMYDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII1_RS00005Primary locus identifier stored in the genes table.
Old locus tagII1_00001Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976338.1Sequence record reported by the local genomic context database.
Genomic interval1-793 nt793 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-793 ntGCF_000399245::NZ_KB976338.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399245::NZ_KB976338.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976338.1All displayed genes belong to this local TCS context.
Neighborhood span1-793 nt793 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt793 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
II1_RS00005GCF_000399245#II1_RS00005
RRSpo0ACurrent focus
1-793 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399245#II1_RS00005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0634590
Simplified PFAM architecture for RROC_0634590
PFAM domain coverage: 219 / 264 aa (83.0%)
1 aa264 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[154-257]
- Domain count: 2
- Matched identifier: RROC_0634590
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 154-257 ; Spo0A_C 154-257
Cluster members and taxonomy
Representative gene: GCF_000399245#II1_RS00005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 218 · GCF_000399245
AssemblyBaci_cere_MC118_V1 · Scaffoldhaploid
Genome composition5 608 415 bp · 35,0% GCBacillus cereus MC118
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key