1 HAMP#1
174-242 aa · 69 aa · 14.3% of protein
Raw token
HAMP:174:1.37e-16:242:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIC_RS25840
Histidine kinase, Classic
Bacillus cereus VD021 · GCF_000399145
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399145#IIC_RS25840Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 484 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:2.29e-16:319:65:643 HATPase_c#3
367-480 aa · 114 aa · 23.6% of protein
Raw token
HATPase_c:367:1.94e-30:480:114:109- Raw architecture: HAMP:174:1.37e-16:242:69:69#HisKA:255:2.29e-16:319:65:64#HATPase_c:367:1.94e-30:480:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399145::NZ_KB976283.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span204527-206672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIC_05076RefSeq proteinWP_002034337.1
Context group ID
GCF_000399145::NZ_KB976283.1::G00060Context members
IIC_RS25840IIC_RS25845
Partner locus tags
IIC_RS25840IIC_RS25845
Partner old locus tags
IIC_05076IIC_05077
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002034337.1Primary protein accession used for annex mappings.
UniProt accessionA0A0A0WIA5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0A0WIA5_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIC_RS25840Primary locus identifier stored in the genes table.
Old locus tagIIC_05076Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976283.1Sequence record reported by the local genomic context database.
Genomic interval204 527-205 981 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span204 527-206 672 ntGCF_000399145::NZ_KB976283.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399145::NZ_KB976283.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976283.1All displayed genes belong to this local TCS context.
Neighborhood span204 527-206 672 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
204 527 nt206 672 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIC_RS25840GCF_000399145#IIC_RS25840
HKClassicCurrent focus
204 527-205 981 nt · Forward (+)
IIC_RS25845GCF_000399145#IIC_RS25845
RROmpR
205 983-206 672 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS25840The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584443
Simplified PFAM architecture for HKOC_1584443
PFAM domain coverage: 226 / 484 aa (46.7%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[255-319] | HATPase_c[370-478]
- Domain count: 3
- Matched identifier: HKOC_1584443
- Positioned domains: HAMP 191-242 ; HisKA 255-319 ; HATPase_c 370-478
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS25840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 224 · GCF_000399145
AssemblyBaci_cere_VD021_V1 · Scaffoldhaploid
Genome composition6 097 836 bp · 35,0% GCBacillus cereus VD021
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key