1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:2.01e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIC_RS04525
Response regulator OmpR family
Bacillus cereus VD021 · GCF_000399145
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399145#IIC_RS04525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:150:1.18e-31:223:77:77- Raw architecture: Response_reg:5:2.01e-34:114:111:111#Trans_reg_C:150:1.18e-31:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399145::NZ_KB976273.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span861734-862411Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIC_00921RefSeq proteinWP_002014310.1
Context group ID
GCF_000399145::NZ_KB976273.1::G00005Context members
IIC_RS04525
Partner locus tags
IIC_RS04525
Partner old locus tags
IIC_00921
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002014310.1Primary protein accession used for annex mappings.
UniProt accessionR8HYT0Primary UniProt accession resolved in the annex database.
UniProt IDR8HYT0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIC_RS04525Primary locus identifier stored in the genes table.
Old locus tagIIC_00921Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976273.1Sequence record reported by the local genomic context database.
Genomic interval861 734-862 411 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span861 734-862 411 ntGCF_000399145::NZ_KB976273.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399145::NZ_KB976273.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976273.1All displayed genes belong to this local TCS context.
Neighborhood span861 734-862 411 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
861 734 nt862 411 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IIC_RS04525GCF_000399145#IIC_RS04525
RROmpRCurrent focus
861 734-862 411 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS16280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463364
Simplified PFAM architecture for RROC_1463364
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1463364
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS16280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 224 · GCF_000399145
AssemblyBaci_cere_VD021_V1 · Scaffoldhaploid
Genome composition6 097 836 bp · 35,0% GCBacillus cereus VD021
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key