1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:2.85e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG9_RS16005
Response regulator NarL family
Bacillus cereus HuA2-9 · GCF_000398985
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398985#IG9_RS16005Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:3.81e-18:205:54:58- Raw architecture: Response_reg:5:2.85e-28:116:113:111#HTH_LUXR:152:3.81e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398985::NZ_KB976153.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span748930-750673Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG9_03272RefSeq proteinWP_049946709.1
Context group ID
GCF_000398985::NZ_KB976153.1::G00038Context members
IG9_RS16000IG9_RS16005
Partner locus tags
IG9_RS16000IG9_RS16005
Partner old locus tags
IG9_03271IG9_03272
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049946709.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG9_RS16005Primary locus identifier stored in the genes table.
Old locus tagIG9_03272Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976153.1Sequence record reported by the local genomic context database.
Genomic interval750 035-750 673 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span748 930-750 673 ntGCF_000398985::NZ_KB976153.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398985::NZ_KB976153.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976153.1All displayed genes belong to this local TCS context.
Neighborhood span748 930-750 673 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
748 930 nt750 673 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG9_RS16000GCF_000398985#IG9_RS16000
HKClassic
748 930-750 030 nt · Reverse (-)
IG9_RS16005GCF_000398985#IG9_RS16005
RRNarLCurrent focus
750 035-750 673 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398985#IG9_RS16005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1986775
Simplified PFAM architecture for RROC_1986775
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-205]
- Domain count: 2
- Matched identifier: RROC_1986775
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 151-205 ; GerE 151-205
Cluster members and taxonomy
Representative gene: GCF_000398985#IG9_RS16005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 204 · GCF_000398985
AssemblyBaci_cere_HuA2-9_V1 · Scaffoldhaploid
Genome composition5 837 558 bp · 35,0% GCBacillus cereus HuA2-9
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key