1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000161:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG9_RS00430
Histidine kinase, Classic
Bacillus cereus HuA2-9 · GCF_000398985
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398985#IG9_RS00430Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 490 aa (46.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.000000000000357:323:66:643 HATPase_c#3
369-460 aa · 92 aa · 18.8% of protein
Raw token
HATPase_c:369:1.51e-16:460:92:109- Raw architecture: HAMP:164:0.00000000000000161:233:70:69#HisKA:258:0.000000000000357:323:66:64#HATPase_c:369:1.51e-16:460:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398985::NZ_KB976152.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92685-94815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG9_00089RefSeq proteinWP_002136525.1
Context group ID
GCF_000398985::NZ_KB976152.1::G00002Context members
IG9_RS00430IG9_RS00435
Partner locus tags
IG9_RS00430IG9_RS00435
Partner old locus tags
IG9_00089IG9_00090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002136525.1Primary protein accession used for annex mappings.
UniProt accessionJ8YRG1Primary UniProt accession resolved in the annex database.
UniProt IDJ8YRG1_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG9_RS00430Primary locus identifier stored in the genes table.
Old locus tagIG9_00089Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976152.1Sequence record reported by the local genomic context database.
Genomic interval92 685-94 157 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span92 685-94 815 ntGCF_000398985::NZ_KB976152.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398985::NZ_KB976152.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976152.1All displayed genes belong to this local TCS context.
Neighborhood span92 685-94 815 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 685 nt94 815 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG9_RS00430GCF_000398985#IG9_RS00430
HKClassicCurrent focus
92 685-94 157 nt · Reverse (-)
IG9_RS00435GCF_000398985#IG9_RS00435
RROmpR
94 150-94 815 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS10465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533837
Simplified PFAM architecture for HKOC_1533837
PFAM domain coverage: 228 / 490 aa (46.5%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-479]
- Domain count: 3
- Matched identifier: HKOC_1533837
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-479
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS10465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 204 · GCF_000398985
AssemblyBaci_cere_HuA2-9_V1 · Scaffoldhaploid
Genome composition5 837 558 bp · 35,0% GCBacillus cereus HuA2-9
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key