1 HisKA_3#1
199-266 aa · 68 aa · 16.8% of protein
Raw token
HisKA_3:199:1.42e-17:266:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGA_RS06230
Histidine kinase, Classic
Bacillus cereus HuA3-9 · GCF_000398965
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398965#IGA_RS06230Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 405 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-395 aa · 87 aa · 21.5% of protein
Raw token
HATPase_c:309:0.0000000000000174:395:100:109- Raw architecture: HisKA_3:199:1.42e-17:266:68:68#HATPase_c:309:0.0000000000000174:395:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398965::NZ_KB976125.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1257274-1259125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGA_01274RefSeq proteinWP_016094619.1
Context group ID
GCF_000398965::NZ_KB976125.1::G00017Context members
IGA_RS06225IGA_RS06230
Partner locus tags
IGA_RS06225IGA_RS06230
Partner old locus tags
IGA_01273IGA_01274
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016094619.1Primary protein accession used for annex mappings.
UniProt accessionR8DCL5Primary UniProt accession resolved in the annex database.
UniProt IDR8DCL5_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGA_RS06230Primary locus identifier stored in the genes table.
Old locus tagIGA_01274Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976125.1Sequence record reported by the local genomic context database.
Genomic interval1 257 908-1 259 125 nt1 218 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 257 274-1 259 125 ntGCF_000398965::NZ_KB976125.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398965::NZ_KB976125.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976125.1All displayed genes belong to this local TCS context.
Neighborhood span1 257 274-1 259 125 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 257 274 nt1 259 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGA_RS06225GCF_000398965#IGA_RS06225
RRNarL
1 257 274-1 257 918 nt · Reverse (-)
IGA_RS06230GCF_000398965#IGA_RS06230
HKClassicCurrent focus
1 257 908-1 259 125 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS06230The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2397854
Simplified PFAM architecture for HKOC_2397854
PFAM domain coverage: 157 / 405 aa (38.8%)
1 aa405 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[199-265] | HATPase_c[307-396]
- Domain count: 2
- Matched identifier: HKOC_2397854
- Positioned domains: HisKA_3 199-265 ; HATPase_c 307-396
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS06230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 205 · GCF_000398965
AssemblyBaci_cere_HuA3-9_V1 · Scaffoldhaploid
Genome composition6 241 316 bp · 35,0% GCBacillus cereus HuA3-9
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key