1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:5.85e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGA_RS00525
Response regulator NarL family
Bacillus cereus HuA3-9 · GCF_000398965
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398965#IGA_RS00525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 211 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 26.1% of protein
Raw token
HTH_LUXR:151:5.57e-24:205:55:58- Raw architecture: Response_reg:6:5.85e-37:116:111:111#HTH_LUXR:151:5.57e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398965::NZ_KB976125.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113007-114754Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGA_00107RefSeq proteinWP_002065204.1
Context group ID
GCF_000398965::NZ_KB976125.1::G00002Context members
IGA_RS00525IGA_RS00530
Partner locus tags
IGA_RS00525IGA_RS00530
Partner old locus tags
IGA_00107IGA_00108
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002065204.1Primary protein accession used for annex mappings.
UniProt accessionC2XTM0Primary UniProt accession resolved in the annex database.
UniProt IDC2XTM0_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGA_RS00525Primary locus identifier stored in the genes table.
Old locus tagIGA_00107Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976125.1Sequence record reported by the local genomic context database.
Genomic interval113 007-113 642 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 007-114 754 ntGCF_000398965::NZ_KB976125.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398965::NZ_KB976125.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976125.1All displayed genes belong to this local TCS context.
Neighborhood span113 007-114 754 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 007 nt114 754 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGA_RS00525GCF_000398965#IGA_RS00525
RRNarLCurrent focus
113 007-113 642 nt · Reverse (-)
IGA_RS00530GCF_000398965#IGA_RS00530
HKClassic
113 657-114 754 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS10265Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2003572
Simplified PFAM architecture for RROC_2003572
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2003572
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS10265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 205 · GCF_000398965
AssemblyBaci_cere_HuA3-9_V1 · Scaffoldhaploid
Genome composition6 241 316 bp · 35,0% GCBacillus cereus HuA3-9
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key