1 HisKA#1
34-101 aa · 68 aa · 26.2% of protein
Raw token
HisKA:34:0.00000000000000266:101:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EBGED10_RS04455
Histidine kinase, Classic
Bacillus sp. GeD10 · GCF_000382845
ClassHKTypeClassicLength260 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000382845#EBGED10_RS04455Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length260 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 260 aa (68.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa260 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
147-256 aa · 110 aa · 42.3% of protein
Raw token
HATPase_c:147:1.58e-27:256:110:109- Raw architecture: HisKA:34:0.00000000000000266:101:68:64#HATPase_c:147:1.58e-27:256:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000382845::NZ_CAVI010000052.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3979-4762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEBGED10_8820RefSeq proteinWP_033691855.1
Context group ID
GCF_000382845::NZ_CAVI010000052.1::G00046Context members
EBGED10_RS04455
Partner locus tags
EBGED10_RS04455
Partner old locus tags
EBGED10_8820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033691855.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEBGED10_RS04455Primary locus identifier stored in the genes table.
Old locus tagEBGED10_8820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAVI010000052.1Sequence record reported by the local genomic context database.
Genomic interval3 979-4 762 nt784 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 979-4 762 ntGCF_000382845::NZ_CAVI010000052.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000382845::NZ_CAVI010000052.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAVI010000052.1All displayed genes belong to this local TCS context.
Neighborhood span3 979-4 762 nt784 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 979 nt4 762 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EBGED10_RS04455GCF_000382845#EBGED10_RS04455
HKClassicCurrent focus
3 979-4 762 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000382845#EBGED10_RS04455The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2914024
Simplified PFAM architecture for HKOC_2914024
PFAM domain coverage: 175 / 260 aa (67.3%)
1 aa260 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[35-101] | HATPase_c[150-257]
- Domain count: 2
- Matched identifier: HKOC_2914024
- Positioned domains: HisKA 35-101 ; HATPase_c 150-257
Cluster members and taxonomy
Representative gene: GCF_000382845#EBGED10_RS04455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 301 086 · GCF_000382845
AssemblyASM38284v1 · Scaffoldhaploid
Genome composition5 865 695 bp · 35,0% GCBacillus sp. GeD10
Signal transduction countsGenes 96 · HK 53 · RR 43CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key