1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.000000546:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EBGED10_RS01285
Histidine kinase, Classic
Bacillus sp. GeD10 · GCF_000382845
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000382845#EBGED10_RS01285Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.00000000000193:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:4.31e-26:364:113:109- Raw architecture: HAMP:63:0.000000546:130:68:69#HisKA:141:0.00000000000193:208:68:64#HATPase_c:253:4.31e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000382845::NZ_CAVI010000016.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21806-23603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEBGED10_2490RefSeq proteinWP_006915665.1
Context group ID
GCF_000382845::NZ_CAVI010000016.1::G00055Context members
EBGED10_RS01280EBGED10_RS01285
Partner locus tags
EBGED10_RS01280EBGED10_RS01285
Partner old locus tags
EBGED10_2480EBGED10_2490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_006915665.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEBGED10_RS01285Primary locus identifier stored in the genes table.
Old locus tagEBGED10_2490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAVI010000016.1Sequence record reported by the local genomic context database.
Genomic interval22 497-23 603 nt1 107 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 806-23 603 ntGCF_000382845::NZ_CAVI010000016.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000382845::NZ_CAVI010000016.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAVI010000016.1All displayed genes belong to this local TCS context.
Neighborhood span21 806-23 603 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 806 nt23 603 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EBGED10_RS01280GCF_000382845#EBGED10_RS01280
RROmpR
21 806-22 504 nt · Forward (+)
EBGED10_RS01285GCF_000382845#EBGED10_RS01285
HKClassicCurrent focus
22 497-23 603 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000382845#EBGED10_RS01285The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2698312
Simplified PFAM architecture for HKOC_2698312
PFAM domain coverage: 223 / 368 aa (60.6%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[85-129] | HisKA[141-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2698312
- Positioned domains: HAMP 85-129 ; HisKA 141-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_000382845#EBGED10_RS01285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 301 086 · GCF_000382845
AssemblyASM38284v1 · Scaffoldhaploid
Genome composition5 865 695 bp · 35,0% GCBacillus sp. GeD10
Signal transduction countsGenes 96 · HK 53 · RR 43CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key