1 Response_reg#1
3-105 aa · 103 aa · 20.7% of protein
Raw token
Response_reg:3:8.41e-22:105:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS18970
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS18970Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 498 aa (35.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
398-439 aa · 42 aa · 8.4% of protein
Raw token
HTH_AraC:398:0.000000737:439:42:423 HTH_AraC#3
454-485 aa · 32 aa · 6.4% of protein
Raw token
HTH_AraC:454:0.0000627:485:32:42- Raw architecture: Response_reg:3:8.41e-22:105:103:111#HTH_AraC:398:0.000000737:439:42:42#HTH_AraC:454:0.0000627:485:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850951.1::G00096
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1665587-1668947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_03819RefSeq proteinWP_002603583.1
Context group ID
GCF_000371445::NZ_KB850951.1::G00096Context members
HMPREF1093_RS18965HMPREF1093_RS18970
Partner locus tags
HMPREF1093_RS18965HMPREF1093_RS18970
Partner old locus tags
HMPREF1093_03818HMPREF1093_03819
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603583.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DNP1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DNP1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS18970Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_03819Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850951.1Sequence record reported by the local genomic context database.
Genomic interval1 667 451-1 668 947 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 665 587-1 668 947 ntGCF_000371445::NZ_KB850951.1::G00096
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850951.1::G00096Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850951.1All displayed genes belong to this local TCS context.
Neighborhood span1 665 587-1 668 947 nt3 361 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 665 587 nt1 668 947 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS18965GCF_000371445#HMPREF1093_RS18965
HKClassic
1 665 587-1 667 476 nt · Forward (+)
HMPREF1093_RS18970GCF_000371445#HMPREF1093_RS18970
RRunclassifiedCurrent focus
1 667 451-1 668 947 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS18970The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0160016
Simplified PFAM architecture for RROC_0160016
PFAM domain coverage: 182 / 498 aa (36.5%)
1 aa498 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-107] | HTH_18[413-489]
- Domain count: 2
- Matched identifier: RROC_0160016
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; HTH_18 413-489 ; HTH_18 413-489
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS18970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key