1 HAMP#1
170-239 aa · 70 aa · 15.0% of protein
Raw token
HAMP:170:0.00000000000451:239:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS10745
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371445#HMPREF1093_RS10745Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 468 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-308 aa · 65 aa · 13.9% of protein
Raw token
HisKA:244:9.76e-16:308:65:643 HATPase_c#3
354-463 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:354:1.05e-30:463:110:109- Raw architecture: HAMP:170:0.00000000000451:239:70:69#HisKA:244:9.76e-16:308:65:64#HATPase_c:354:1.05e-30:463:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371445::NZ_KB850950.1::G00061
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2551109-2552515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_02156RefSeq proteinWP_002601948.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00061Context members
HMPREF1093_RS10745
Partner locus tags
HMPREF1093_RS10745
Partner old locus tags
HMPREF1093_02156
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601948.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7H915Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7H915_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS10745Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_02156Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 551 109-2 552 515 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 551 109-2 552 515 ntGCF_000371445::NZ_KB850950.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 551 109-2 552 515 nt1 407 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 551 109 nt2 552 515 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1093_RS10745GCF_000371445#HMPREF1093_RS10745
HKClassicCurrent focus
2 551 109-2 552 515 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS10745The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737956
Simplified PFAM architecture for HKOC_1737956
PFAM domain coverage: 218 / 468 aa (46.6%)
1 aa468 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-238] | HisKA[244-308] | HATPase_c[357-465]
- Domain count: 3
- Matched identifier: HKOC_1737956
- Positioned domains: HAMP 195-238 ; HisKA 244-308 ; HATPase_c 357-465
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS10745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key