1 HisKA#1
269-336 aa · 68 aa · 13.7% of protein
Raw token
HisKA:269:0.000000000000887:336:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS09575
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS09575Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 496 aa (36.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
381-491 aa · 111 aa · 22.4% of protein
Raw token
HATPase_c:381:4.22e-31:491:111:109- Raw architecture: HisKA:269:0.000000000000887:336:68:64#HATPase_c:381:4.22e-31:491:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2268783-2270952Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01923RefSeq proteinWP_002601719.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00053Context members
HMPREF1093_RS09570HMPREF1093_RS09575
Partner locus tags
HMPREF1093_RS09570HMPREF1093_RS09575
Partner old locus tags
HMPREF1093_01922HMPREF1093_01923
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002601719.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS09575Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01923Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 269 462-2 270 952 nt1 491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 268 783-2 270 952 ntGCF_000371445::NZ_KB850950.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 268 783-2 270 952 nt2 170 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 268 783 nt2 270 952 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS09570GCF_000371445#HMPREF1093_RS09570
RROmpR
2 268 783-2 269 469 nt · Reverse (-)
HMPREF1093_RS09575GCF_000371445#HMPREF1093_RS09575
HKClassicCurrent focus
2 269 462-2 270 952 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS09575The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1498868
Simplified PFAM architecture for HKOC_1498868
PFAM domain coverage: 285 / 496 aa (57.5%)
1 aa496 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[20-125] | HisKA[269-336] | HATPase_c[381-491]
- Domain count: 3
- Matched identifier: HKOC_1498868
- Positioned domains: DUF4118 20-125 ; HisKA 269-336 ; HATPase_c 381-491
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS09575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key