1 H_kinase_N#1
19-137 aa · 119 aa · 25.2% of protein
Raw token
H_kinase_N:19:3.57e-16:137:122:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS09535
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS09535Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage377 / 473 aa (79.7%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation4 items
2 PAS_4#2
169-264 aa · 96 aa · 20.3% of protein
Raw token
PAS_4:169:0.000000912:264:107:1103 HisKA_2#3
282-356 aa · 75 aa · 15.9% of protein
Raw token
HisKA_2:282:0.00000000000000633:356:76:764 HATPase_c#4
385-471 aa · 87 aa · 18.4% of protein
Raw token
HATPase_c:385:0.0000000000000084:471:102:109- Raw architecture: H_kinase_N:19:3.57e-16:137:122:139#PAS_4:169:0.000000912:264:107:110#HisKA_2:282:0.00000000000000633:356:76:76#HATPase_c:385:0.0000000000000084:471:102:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2262800-2264869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01915RefSeq proteinWP_002601711.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00052Context members
HMPREF1093_RS09535HMPREF1093_RS09540
Partner locus tags
HMPREF1093_RS09535HMPREF1093_RS09540
Partner old locus tags
HMPREF1093_01915HMPREF1093_01916
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601711.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3BXI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3BXI6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS09535Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 262 800-2 264 221 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 262 800-2 264 869 ntGCF_000371445::NZ_KB850950.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 262 800-2 264 869 nt2 070 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 262 800 nt2 264 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS09535GCF_000371445#HMPREF1093_RS09535
HKClassicCurrent focus
2 262 800-2 264 221 nt · Reverse (-)
HMPREF1093_RS09540GCF_000371445#HMPREF1093_RS09540
RRAmiR_NasR
2 264 294-2 264 869 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS09535The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + PAS_8 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1687196
Simplified PFAM architecture for HKOC_1687196
PFAM domain coverage: 340 / 473 aa (71.9%)
1 aa473 aa
GAF_PdtaSPAS_8HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_8 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[15-138] | PAS_8[163-215] | HisKA_2[282-354] | HATPase_c[381-470]
- Domain count: 4
- Matched identifier: HKOC_1687196
- Positioned domains: GAF_PdtaS 15-138 ; PAS_8 163-215 ; HisKA_2 282-354 ; HATPase_c 381-470
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS09535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key