1 HAMP#1
63-132 aa · 70 aa · 18.5% of protein
Raw token
HAMP:63:0.0000000000967:132:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS09270
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS09270Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 378 aa (65.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
144-210 aa · 67 aa · 17.7% of protein
Raw token
HisKA:144:1.63e-17:210:67:643 HATPase_c#3
256-365 aa · 110 aa · 29.1% of protein
Raw token
HATPase_c:256:2.01e-28:365:111:109- Raw architecture: HAMP:63:0.0000000000967:132:70:69#HisKA:144:1.63e-17:210:67:64#HATPase_c:256:2.01e-28:365:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2189989-2191822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01864RefSeq proteinWP_002601660.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00051Context members
HMPREF1093_RS09270HMPREF1093_RS09275
Partner locus tags
HMPREF1093_RS09270HMPREF1093_RS09275
Partner old locus tags
HMPREF1093_01864HMPREF1093_01865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601660.1Primary protein accession used for annex mappings.
UniProt accessionA0A174D4G5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174D4G5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS09270Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01864Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 189 989-2 191 125 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 189 989-2 191 822 ntGCF_000371445::NZ_KB850950.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 189 989-2 191 822 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 189 989 nt2 191 822 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS09270GCF_000371445#HMPREF1093_RS09270
HKClassicCurrent focus
2 189 989-2 191 125 nt · Reverse (-)
HMPREF1093_RS09275GCF_000371445#HMPREF1093_RS09275
RROmpR
2 191 115-2 191 822 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS09270The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2626817
Simplified PFAM architecture for HKOC_2626817
PFAM domain coverage: 221 / 378 aa (58.5%)
1 aa378 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[86-131] | HisKA[144-209] | HATPase_c[257-365]
- Domain count: 3
- Matched identifier: HKOC_2626817
- Positioned domains: HAMP 86-131 ; HisKA 144-209 ; HATPase_c 257-365
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS09270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key