1 dCache_1#1
173-274 aa · 102 aa · 17.4% of protein
Raw token
dCache_1:173:0.0000477:274:109:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS08815
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS08815Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage353 / 586 aa (60.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation4 items
2 HAMP#2
294-365 aa · 72 aa · 12.3% of protein
Raw token
HAMP:294:0.00000000000183:365:72:693 His_kinase#3
381-459 aa · 79 aa · 13.5% of protein
Raw token
His_kinase:381:3.77e-25:459:79:804 HATPase_c#4
479-578 aa · 100 aa · 17.1% of protein
Raw token
HATPase_c:479:0.0000000258:578:105:109- Raw architecture: dCache_1:173:0.0000477:274:109:195#HAMP:294:0.00000000000183:365:72:69#His_kinase:381:3.77e-25:459:79:80#HATPase_c:479:0.0000000258:578:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2059236-2062594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01770RefSeq proteinWP_002601566.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00050Context members
HMPREF1093_RS08815HMPREF1093_RS08820
Partner locus tags
HMPREF1093_RS08815HMPREF1093_RS08820
Partner old locus tags
HMPREF1093_01770HMPREF1093_01771
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002601566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS08815Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval2 059 236-2 060 996 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 059 236-2 062 594 ntGCF_000371445::NZ_KB850950.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span2 059 236-2 062 594 nt3 359 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 059 236 nt2 062 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS08815GCF_000371445#HMPREF1093_RS08815
HKClassicCurrent focus
2 059 236-2 060 996 nt · Forward (+)
HMPREF1093_RS08820GCF_000371445#HMPREF1093_RS08820
RRunclassified
2 061 011-2 062 594 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS08815The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1131416
Simplified PFAM architecture for HKOC_1131416
PFAM domain coverage: 231 / 586 aa (39.4%)
1 aa586 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[313-364] | His_kinase[381-456] | HATPase_c[478-580]
- Domain count: 3
- Matched identifier: HKOC_1131416
- Positioned domains: HAMP 313-364 ; His_kinase 381-456 ; HATPase_c 478-580
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS08815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key