1 HAMP#1
89-158 aa · 70 aa · 17.3% of protein
Raw token
HAMP:89:0.00000000000000124:158:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS07930
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength404 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS07930Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length404 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 404 aa (60.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa404 aa
Domain-by-domain annotation3 items
2 HisKA#2
162-225 aa · 64 aa · 15.8% of protein
Raw token
HisKA:162:0.00000000000733:225:64:643 HATPase_c#3
271-380 aa · 110 aa · 27.2% of protein
Raw token
HATPase_c:271:1.1e-33:380:110:109- Raw architecture: HAMP:89:0.00000000000000124:158:70:69#HisKA:162:0.00000000000733:225:64:64#HATPase_c:271:1.1e-33:380:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1862694-1864585Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01594RefSeq proteinWP_002601401.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00048Context members
HMPREF1093_RS07930HMPREF1093_RS07935
Partner locus tags
HMPREF1093_RS07930HMPREF1093_RS07935
Partner old locus tags
HMPREF1093_01594HMPREF1093_01595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002601401.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS07930Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01594Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 862 694-1 863 908 nt1 215 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 862 694-1 864 585 ntGCF_000371445::NZ_KB850950.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 862 694-1 864 585 nt1 892 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 862 694 nt1 864 585 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS07930GCF_000371445#HMPREF1093_RS07930
HKClassicCurrent focus
1 862 694-1 863 908 nt · Reverse (-)
HMPREF1093_RS07935GCF_000371445#HMPREF1093_RS07935
RROmpR
1 863 905-1 864 585 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS07930The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2407079
Simplified PFAM architecture for HKOC_2407079
PFAM domain coverage: 223 / 404 aa (55.2%)
1 aa404 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[105-156] | HisKA[163-224] | HATPase_c[273-381]
- Domain count: 3
- Matched identifier: HKOC_2407079
- Positioned domains: HAMP 105-156 ; HisKA 163-224 ; HATPase_c 273-381
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS07930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key