1 HAMP#1
305-372 aa · 68 aa · 10.9% of protein
Raw token
HAMP:305:0.00000000000437:372:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS06550
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS06550Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage272 / 624 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 12.8% of protein
Raw token
His_kinase:387:8.39e-26:466:80:803 HATPase_c#3
485-608 aa · 124 aa · 19.9% of protein
Raw token
HATPase_c:485:0.000000424:608:124:109- Raw architecture: HAMP:305:0.00000000000437:372:68:69#His_kinase:387:8.39e-26:466:80:80#HATPase_c:485:0.000000424:608:124:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1522045-1525523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01317RefSeq proteinWP_002601125.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00038Context members
HMPREF1093_RS06550HMPREF1093_RS06555
Partner locus tags
HMPREF1093_RS06550HMPREF1093_RS06555
Partner old locus tags
HMPREF1093_01317HMPREF1093_01318
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002601125.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS06550Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01317Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 522 045-1 523 919 nt1 875 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 522 045-1 525 523 ntGCF_000371445::NZ_KB850950.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 522 045-1 525 523 nt3 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 522 045 nt1 525 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS06550GCF_000371445#HMPREF1093_RS06550
HKClassicCurrent focus
1 522 045-1 523 919 nt · Forward (+)
HMPREF1093_RS06555GCF_000371445#HMPREF1093_RS06555
RRunclassified
1 523 916-1 525 523 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS06550The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0961595
Simplified PFAM architecture for HKOC_0961595
PFAM domain coverage: 128 / 624 aa (20.5%)
1 aa624 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[321-370] | His_kinase[388-465]
- Domain count: 2
- Matched identifier: HKOC_0961595
- Positioned domains: HAMP 321-370 ; His_kinase 388-465
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS06550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key