1 HisKA#1
209-296 aa · 88 aa · 19.1% of protein
Raw token
HisKA:209:0.0000000000086:296:88:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS06115
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS06115Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 461 aa (43.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-452 aa · 110 aa · 23.9% of protein
Raw token
HATPase_c:343:2.31e-30:452:110:109- Raw architecture: HisKA:209:0.0000000000086:296:88:64#HATPase_c:343:2.31e-30:452:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1421840-1423907Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01229RefSeq proteinWP_002601037.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00036Context members
HMPREF1093_RS06110HMPREF1093_RS06115
Partner locus tags
HMPREF1093_RS06110HMPREF1093_RS06115
Partner old locus tags
HMPREF1093_01228HMPREF1093_01229
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002601037.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS06115Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01229Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 422 522-1 423 907 nt1 386 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 421 840-1 423 907 ntGCF_000371445::NZ_KB850950.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 421 840-1 423 907 nt2 068 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 421 840 nt1 423 907 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS06110GCF_000371445#HMPREF1093_RS06110
RROmpR
1 421 840-1 422 529 nt · Forward (+)
HMPREF1093_RS06115GCF_000371445#HMPREF1093_RS06115
HKClassicCurrent focus
1 422 522-1 423 907 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS06115The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1820657
Simplified PFAM architecture for HKOC_1820657
PFAM domain coverage: 197 / 461 aa (42.7%)
1 aa461 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[210-296] | HATPase_c[343-452]
- Domain count: 2
- Matched identifier: HKOC_1820657
- Positioned domains: HisKA 210-296 ; HATPase_c 343-452
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS06115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key