1 HAMP#1
328-397 aa · 70 aa · 11.5% of protein
Raw token
HAMP:328:0.000000757:397:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS05515
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS05515Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 607 aa (40.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation3 items
2 His_kinase#2
413-491 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:413:1.31e-28:491:79:803 HATPase_c#3
511-606 aa · 96 aa · 15.8% of protein
Raw token
HATPase_c:511:0.00000000000503:606:105:109- Raw architecture: HAMP:328:0.000000757:397:70:69#His_kinase:413:1.31e-28:491:79:80#HATPase_c:511:0.00000000000503:606:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1288684-1292082Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_01112RefSeq proteinWP_002600921.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00032Context members
HMPREF1093_RS05515HMPREF1093_RS05520
Partner locus tags
HMPREF1093_RS05515HMPREF1093_RS05520
Partner old locus tags
HMPREF1093_01112HMPREF1093_01113
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600921.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DS25Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DS25_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS05515Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_01112Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 288 684-1 290 507 nt1 824 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 288 684-1 292 082 ntGCF_000371445::NZ_KB850950.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 288 684-1 292 082 nt3 399 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 288 684 nt1 292 082 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS05515GCF_000371445#HMPREF1093_RS05515
HKClassicCurrent focus
1 288 684-1 290 507 nt · Reverse (-)
HMPREF1093_RS05520GCF_000371445#HMPREF1093_RS05520
RRunclassified
1 290 514-1 292 082 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS05515The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1018839
Simplified PFAM architecture for HKOC_1018839
PFAM domain coverage: 175 / 607 aa (28.8%)
1 aa607 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[413-491] | HATPase_c[511-606]
- Domain count: 2
- Matched identifier: HKOC_1018839
- Positioned domains: His_kinase 413-491 ; HATPase_c 511-606
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS05515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key