1 HAMP#1
166-233 aa · 68 aa · 15.2% of protein
Raw token
HAMP:166:0.0000121:233:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS04490
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS04490Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage219 / 448 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-305 aa · 62 aa · 13.8% of protein
Raw token
HisKA:244:0.000000000117:305:62:643 HATPase_c#3
360-448 aa · 89 aa · 19.9% of protein
Raw token
HATPase_c:360:0.00000025:448:106:109- Raw architecture: HAMP:166:0.0000121:233:68:69#HisKA:244:0.000000000117:305:62:64#HATPase_c:360:0.00000025:448:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1035604-1037629Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00905RefSeq proteinWP_051079258.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00029Context members
HMPREF1093_RS04490HMPREF1093_RS04495
Partner locus tags
HMPREF1093_RS04490HMPREF1093_RS04495
Partner old locus tags
HMPREF1093_00905HMPREF1093_00906
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051079258.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS04490Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 035 604-1 036 950 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 035 604-1 037 629 ntGCF_000371445::NZ_KB850950.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 035 604-1 037 629 nt2 026 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 035 604 nt1 037 629 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS04490GCF_000371445#HMPREF1093_RS04490
HKClassicCurrent focus
1 035 604-1 036 950 nt · Reverse (-)
HMPREF1093_RS04495GCF_000371445#HMPREF1093_RS04495
RROmpR
1 036 943-1 037 629 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS04490The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1988146
Simplified PFAM architecture for HKOC_1988146
PFAM domain coverage: 102 / 448 aa (22.8%)
1 aa448 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[190-231] | HisKA[245-304]
- Domain count: 2
- Matched identifier: HKOC_1988146
- Positioned domains: HAMP 190-231 ; HisKA 245-304
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS04490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key