1 HAMP#1
274-339 aa · 66 aa · 11.8% of protein
Raw token
HAMP:274:0.0000000000207:339:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS04400
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength557 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS04400Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length557 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 557 aa (41.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa557 aa
Domain-by-domain annotation3 items
2 His_kinase#2
356-428 aa · 73 aa · 13.1% of protein
Raw token
His_kinase:356:3.04e-21:428:73:803 HATPase_c#3
458-551 aa · 94 aa · 16.9% of protein
Raw token
HATPase_c:458:0.000000162:551:98:109- Raw architecture: HAMP:274:0.0000000000207:339:66:69#His_kinase:356:3.04e-21:428:73:80#HATPase_c:458:0.000000162:551:98:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1012328-1015593Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00887RefSeq proteinWP_002600698.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00028Context members
HMPREF1093_RS04395HMPREF1093_RS04400
Partner locus tags
HMPREF1093_RS04395HMPREF1093_RS04400
Partner old locus tags
HMPREF1093_00886HMPREF1093_00887
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600698.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YR57Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YR57_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS04400Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00887Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval1 013 920-1 015 593 nt1 674 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 012 328-1 015 593 ntGCF_000371445::NZ_KB850950.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span1 012 328-1 015 593 nt3 266 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 012 328 nt1 015 593 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS04395GCF_000371445#HMPREF1093_RS04395
RRunclassified
1 012 328-1 013 905 nt · Reverse (-)
HMPREF1093_RS04400GCF_000371445#HMPREF1093_RS04400
HKClassicCurrent focus
1 013 920-1 015 593 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS04400The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1268419
Simplified PFAM architecture for HKOC_1268419
PFAM domain coverage: 214 / 557 aa (38.4%)
1 aa557 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[294-339] | His_kinase[356-428] | HATPase_c[458-552]
- Domain count: 3
- Matched identifier: HKOC_1268419
- Positioned domains: HAMP 294-339 ; His_kinase 356-428 ; HATPase_c 458-552
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS04400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key