1 Response_reg#1
5-117 aa · 113 aa · 22.1% of protein
Raw token
Response_reg:5:2.78e-29:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS03890
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength511 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS03890Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length511 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 511 aa (37.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa511 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
402-445 aa · 44 aa · 8.6% of protein
Raw token
HTH_AraC:402:0.0000497:445:44:423 HTH_AraC#3
463-497 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:463:0.00000000385:497:35:42- Raw architecture: Response_reg:5:2.78e-29:117:113:111#HTH_AraC:402:0.0000497:445:44:42#HTH_AraC:463:0.00000000385:497:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span884224-887545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00785RefSeq proteinWP_002600596.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00026Context members
HMPREF1093_RS03885HMPREF1093_RS03890
Partner locus tags
HMPREF1093_RS03885HMPREF1093_RS03890
Partner old locus tags
HMPREF1093_00784HMPREF1093_00785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600596.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PEN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PEN3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS03890Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval886 010-887 545 nt1 536 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span884 224-887 545 ntGCF_000371445::NZ_KB850950.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span884 224-887 545 nt3 322 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
884 224 nt887 545 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS03885GCF_000371445#HMPREF1093_RS03885
HKClassic
884 224-886 038 nt · Forward (+)
HMPREF1093_RS03890GCF_000371445#HMPREF1093_RS03890
RRunclassifiedCurrent focus
886 010-887 545 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS03890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0144978
Simplified PFAM architecture for RROC_0144978
PFAM domain coverage: 189 / 511 aa (37.0%)
1 aa511 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[420-495]
- Domain count: 2
- Matched identifier: RROC_0144978
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 420-495 ; HTH_18 420-495
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS03890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key