1 HAMP#1
302-375 aa · 74 aa · 12.3% of protein
Raw token
HAMP:302:0.0000000671:375:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS03885
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS03885Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 604 aa (40.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation3 items
2 His_kinase#2
390-469 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:390:1.04e-31:469:80:803 HATPase_c#3
475-567 aa · 93 aa · 15.4% of protein
Raw token
HATPase_c:475:0.000000000861:567:98:109- Raw architecture: HAMP:302:0.0000000671:375:74:69#His_kinase:390:1.04e-31:469:80:80#HATPase_c:475:0.000000000861:567:98:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span884224-887545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00784RefSeq proteinWP_002600595.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00026Context members
HMPREF1093_RS03885HMPREF1093_RS03890
Partner locus tags
HMPREF1093_RS03885HMPREF1093_RS03890
Partner old locus tags
HMPREF1093_00784HMPREF1093_00785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600595.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS03885Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00784Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval884 224-886 038 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span884 224-887 545 ntGCF_000371445::NZ_KB850950.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span884 224-887 545 nt3 322 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
884 224 nt887 545 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS03885GCF_000371445#HMPREF1093_RS03885
HKClassicCurrent focus
884 224-886 038 nt · Forward (+)
HMPREF1093_RS03890GCF_000371445#HMPREF1093_RS03890
RRunclassified
886 010-887 545 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS03885The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1032706
Simplified PFAM architecture for HKOC_1032706
PFAM domain coverage: 159 / 604 aa (26.3%)
1 aa604 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[390-469] | HATPase_c[489-567]
- Domain count: 2
- Matched identifier: HKOC_1032706
- Positioned domains: His_kinase 390-469 ; HATPase_c 489-567
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS03885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key