1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.18e-21:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS03580
Response regulator OmpR family
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371445#HMPREF1093_RS03580Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:2.62e-29:221:75:77- Raw architecture: Response_reg:4:1.18e-21:113:111:111#Trans_reg_C:148:2.62e-29:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371445::NZ_KB850950.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span821406-822077Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00721RefSeq proteinWP_002600532.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00025Context members
HMPREF1093_RS03580
Partner locus tags
HMPREF1093_RS03580
Partner old locus tags
HMPREF1093_00721
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600532.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ME72Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ME72_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS03580Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00721Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval821 406-822 077 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span821 406-822 077 ntGCF_000371445::NZ_KB850950.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span821 406-822 077 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
821 406 nt822 077 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1093_RS03580GCF_000371445#HMPREF1093_RS03580
RROmpRCurrent focus
821 406-822 077 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS03580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1589131
Simplified PFAM architecture for RROC_1589131
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1589131
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key