1 dCache_1#1
186-290 aa · 105 aa · 17.2% of protein
Raw token
dCache_1:186:0.0000000000942:290:111:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS03105
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS03105Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage360 / 611 aa (58.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 HAMP#2
309-378 aa · 70 aa · 11.5% of protein
Raw token
HAMP:309:0.00000000158:378:70:693 His_kinase#3
393-472 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:393:3.65e-30:472:80:804 HATPase_c#4
491-595 aa · 105 aa · 17.2% of protein
Raw token
HATPase_c:491:0.000000000000326:595:106:109- Raw architecture: dCache_1:186:0.0000000000942:290:111:195#HAMP:309:0.00000000158:378:70:69#His_kinase:393:3.65e-30:472:80:80#HATPase_c:491:0.000000000000326:595:106:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span706233-709590Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00624RefSeq proteinWP_002600436.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00022Context members
HMPREF1093_RS03100HMPREF1093_RS03105
Partner locus tags
HMPREF1093_RS03100HMPREF1093_RS03105
Partner old locus tags
HMPREF1093_00623HMPREF1093_00624
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600436.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS03105Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00624Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval707 755-709 590 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span706 233-709 590 ntGCF_000371445::NZ_KB850950.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span706 233-709 590 nt3 358 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
706 233 nt709 590 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS03100GCF_000371445#HMPREF1093_RS03100
RRunclassified
706 233-707 777 nt · Reverse (-)
HMPREF1093_RS03105GCF_000371445#HMPREF1093_RS03105
HKClassicCurrent focus
707 755-709 590 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS03105The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000810
Simplified PFAM architecture for HKOC_1000810
PFAM domain coverage: 183 / 611 aa (30.0%)
1 aa611 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[394-471] | HATPase_c[491-595]
- Domain count: 2
- Matched identifier: HKOC_1000810
- Positioned domains: His_kinase 394-471 ; HATPase_c 491-595
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS03105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key