1 Response_reg#1
7-118 aa · 112 aa · 35.9% of protein
Raw token
Response_reg:7:1.49e-31:118:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS02620
Response regulator, PleD family
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypePleDLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS02620Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage265 / 312 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 GGDEF#2
148-300 aa · 153 aa · 49.0% of protein
Raw token
GGDEF:148:1.53e-44:300:160:160- Raw architecture: Response_reg:7:1.49e-31:118:112:111#GGDEF:148:1.53e-44:300:160:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span611757-614647Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00524RefSeq proteinWP_002600338.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00019Context members
HMPREF1093_RS02615HMPREF1093_RS02620
Partner locus tags
HMPREF1093_RS02615HMPREF1093_RS02620
Partner old locus tags
HMPREF1093_00523HMPREF1093_00524
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600338.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS02620Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00524Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval613 709-614 647 nt939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span611 757-614 647 ntGCF_000371445::NZ_KB850950.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span611 757-614 647 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
611 757 nt614 647 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS02615GCF_000371445#HMPREF1093_RS02615
HKCheA
611 757-613 703 nt · Reverse (-)
HMPREF1093_RS02620GCF_000371445#HMPREF1093_RS02620
RRPleDCurrent focus
613 709-614 647 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS02620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0547009
Simplified PFAM architecture for RROC_0547009
PFAM domain coverage: 265 / 312 aa (84.9%)
1 aa312 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[7-118] | GGDEF[148-300]
- Domain count: 2
- Matched identifier: RROC_0547009
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GGDEF 148-300 ; GGDEF 148-300
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS02620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key