1 Hpt#1
10-101 aa · 92 aa · 14.2% of protein
Raw token
Hpt:10:0.0000000000101:101:92:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS02615
Histidine kinase, CheA
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeCheALength648 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS02615Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage442 / 648 aa (68.2%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
261-334 aa · 74 aa · 11.4% of protein
Raw token
H-kinase_dim:261:0.000000248:334:74:673 HATPase_c#3
360-501 aa · 142 aa · 21.9% of protein
Raw token
HATPase_c:360:6.09e-19:501:142:1094 CheW#4
506-639 aa · 134 aa · 20.7% of protein
Raw token
CheW:506:1.55e-16:639:135:138- Raw architecture: Hpt:10:0.0000000000101:101:92:84#H-kinase_dim:261:0.000000248:334:74:67#HATPase_c:360:6.09e-19:501:142:109#CheW:506:1.55e-16:639:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span611757-614647Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00523RefSeq proteinWP_002600337.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00019Context members
HMPREF1093_RS02615HMPREF1093_RS02620
Partner locus tags
HMPREF1093_RS02615HMPREF1093_RS02620
Partner old locus tags
HMPREF1093_00523HMPREF1093_00524
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600337.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS02615Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00523Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval611 757-613 703 nt1 947 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span611 757-614 647 ntGCF_000371445::NZ_KB850950.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span611 757-614 647 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
611 757 nt614 647 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS02615GCF_000371445#HMPREF1093_RS02615
HKCheACurrent focus
611 757-613 703 nt · Reverse (-)
HMPREF1093_RS02620GCF_000371445#HMPREF1093_RS02620
RRPleD
613 709-614 647 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS02615The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0901025
Simplified PFAM architecture for HKOC_0901025
PFAM domain coverage: 485 / 648 aa (74.8%)
1 aa648 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[10-96] | P2[144-220] | H-kinase_dim[260-310] | HATPase_c[364-501] | CheW[508-639]
- Domain count: 5
- Matched identifier: HKOC_0901025
- Positioned domains: Hpt 10-96 ; P2 144-220 ; H-kinase_dim 260-310 ; HATPase_c 364-501 ; CheW 508-639
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS02615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key