1 dCache_1#1
43-283 aa · 241 aa · 40.6% of protein
Raw token
dCache_1:43:0.000000000169:283:250:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS02210
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371445#HMPREF1093_RS02210Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage498 / 593 aa (84.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation4 items
2 HAMP#2
304-369 aa · 66 aa · 11.1% of protein
Raw token
HAMP:304:0.0000000000185:369:66:693 His_kinase#3
384-463 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:384:1.78e-32:463:80:804 HATPase_c#4
480-590 aa · 111 aa · 18.7% of protein
Raw token
HATPase_c:480:0.0000000163:590:112:109- Raw architecture: dCache_1:43:0.000000000169:283:250:195#HAMP:304:0.0000000000185:369:66:69#His_kinase:384:1.78e-32:463:80:80#HATPase_c:480:0.0000000163:590:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371445::NZ_KB850950.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span527263-529044Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00440RefSeq proteinWP_002600254.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00017Context members
HMPREF1093_RS02210
Partner locus tags
HMPREF1093_RS02210
Partner old locus tags
HMPREF1093_00440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600254.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS02210Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval527 263-529 044 nt1 782 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span527 263-529 044 ntGCF_000371445::NZ_KB850950.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span527 263-529 044 nt1 782 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
527 263 nt529 044 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1093_RS02210GCF_000371445#HMPREF1093_RS02210
HKClassicCurrent focus
527 263-529 044 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS02210The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1093024
Simplified PFAM architecture for HKOC_1093024
PFAM domain coverage: 480 / 593 aa (80.9%)
1 aa593 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[45-282] | HAMP[318-369] | His_kinase[384-463] | HATPase_c[480-589]
- Domain count: 4
- Matched identifier: HKOC_1093024
- Positioned domains: dCache_1 45-282 ; HAMP 318-369 ; His_kinase 384-463 ; HATPase_c 480-589
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS02210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key