1 Response_reg#1
4-117 aa · 114 aa · 22.6% of protein
Raw token
Response_reg:4:1.18e-22:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS02020
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371445#HMPREF1093_RS02020Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 505 aa (37.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
402-443 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:402:0.00000000278:443:42:423 HTH_AraC#3
459-493 aa · 35 aa · 6.9% of protein
Raw token
HTH_AraC:459:0.0000000442:493:35:42- Raw architecture: Response_reg:4:1.18e-22:117:114:111#HTH_AraC:402:0.00000000278:443:42:42#HTH_AraC:459:0.0000000442:493:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371445::NZ_KB850950.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span484010-485527Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00401RefSeq proteinWP_002600215.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00013Context members
HMPREF1093_RS02020
Partner locus tags
HMPREF1093_RS02020
Partner old locus tags
HMPREF1093_00401
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600215.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DKU7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DKU7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS02020Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00401Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval484 010-485 527 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span484 010-485 527 ntGCF_000371445::NZ_KB850950.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span484 010-485 527 nt1 518 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
484 010 nt485 527 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1093_RS02020GCF_000371445#HMPREF1093_RS02020
RRunclassifiedCurrent focus
484 010-485 527 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS02020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152300
Simplified PFAM architecture for RROC_0152300
PFAM domain coverage: 192 / 505 aa (38.0%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[415-494]
- Domain count: 2
- Matched identifier: RROC_0152300
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 415-494 ; HTH_18 415-494
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS02020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key